PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13114_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 177aa    MW: 19835.2 Da    PI: 6.7927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13114_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.3e-095191954
                 HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  r RR+ri +++  L++++P  a      K++ +++L +A+ Y+k L
  RrC13114_p1 51 ARERRHRISDRLKILQSMVPGgA------KMDTVSMLDEAISYVKFL 91
                 699*****************966......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9194291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-1347101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-114895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.45E-124895No hitNo description
SMARTSM003531.4E-114897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-65191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDQSSIRSLN PNSSSTTSSS SSSFHSHKGR IKGNKNQSVS TLSTDPQSVA ARERRHRISD  60
RLKILQSMVP GGAKMDTVSM LDEAISYVKF LKAQIWFHHN MLLFFNDYET TTPCTYSPAG  120
VSEFEPRLFG CDDDYTPVVE TYSQGMPLLT VADPGNPMWY SSVDDEQKET MHRRGLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2409350.0AC240935.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF042C17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013720171.11e-109PREDICTED: transcription factor bHLH140-like
SwissprotQ9M0411e-71BH140_ARATH; Transcription factor bHLH140
TrEMBLA0A0D3AHE51e-110A0A0D3AHE5_BRAOL; Uncharacterized protein
STRINGBra028895.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152901418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.18e-68APRATAXIN-like